Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507/__temp__                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  31,773,592
 Normal Paired: 21,635,164 (68.09%)
 Chimeric Paired: 8,078,139 (25.42%)
 Chimeric Ambiguous: 1,250,439 (3.94%)
 Unmapped: 809,850 (2.55%)
 Ligation Motif Present: 5,206 (0.02%)
Alignable (Normal+Chimeric Paired): 29,713,303 (93.52%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-02T15:13:27,414]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 14,586,651 (45.91%)
PCR Duplicates: 15,126,652 (47.61%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 18,083,648
Intra-fragment Reads: 6,898,191 (21.71% / 47.29%)
Below MAPQ Threshold: 928,174 (2.92% / 6.36%)
Hi-C Contacts: 6,760,286 (21.28% / 46.35%)
 Ligation Motif Present: 2,311  (0.01% / 0.02%)
 3' Bias (Long Range): 81% - 19%
 Pair Type %(L-I-O-R): 26% - 25% - 25% - 24%
Inter-chromosomal: 1,588,356  (5.00% / 10.89%)
Intra-chromosomal: 5,171,930  (16.28% / 35.46%)
Short Range (<20Kb): 2,483,559  (7.82% / 17.03%)
Long Range (>20Kb): 2,688,359  (8.46% / 18.43%)